4Z09
Crystal structure of FVO strain Plasmodium falciparum AMA1 in complex with the RON2hp [Thr2040Ala] peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-12-02 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 0.9464 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.075, 72.025, 115.390 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.157 - 2.000 |
R-factor | 0.1974 |
Rwork | 0.196 |
R-free | 0.22990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4r1a |
RMSD bond length | 0.002 |
RMSD bond angle | 0.575 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.070 | 38.070 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.221 | 0.123 | 0.852 |
Rpim | 0.071 | 0.043 | 0.326 |
Total number of observations | 227394 | 3119 | 11148 |
Number of reflections | 21689 | ||
<I/σ(I)> | 10.8 | 18.9 | 4 |
Completeness [%] | 97.8 | 99.3 | 91.5 |
Redundancy | 10.5 | 10.1 | 7.7 |
CC(1/2) | 0.978 | 0.817 | 0.524 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.6 | 298 | 15-20% PEG400, 0.1 M Tris-HCl, pH 8.6, 0.1 M sodium acetate and 20% isopropanol |