Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YYP

Crystal structure of human PLK4-PB3 in complex with STIL-CC

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2014-07-04
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.0000
Spacegroup nameC 2 2 21
Unit cell lengths86.570, 136.330, 33.440
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.800 - 2.600
R-factor0.2208
Rwork0.217
R-free0.25420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3p34
RMSD bond length0.010
RMSD bond angle1.150
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]68.1002.760
High resolution limit [Å]2.6002.600
Rmerge0.1502.370
Number of reflections6428
<I/σ(I)>10.30.9
Completeness [%]99.799
Redundancy6.46.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP291Thin needles grew in precipitant solution containing 100 mM Hepes, pH 7.0, 20 mM MgCl2 and 22% Poly(acrylic acid sodium salt) 5100. After extensive optimization and seeding plate-like crystals were grown in a drop consisting of 50% PLK4-PB3/STIL-CC complex solution, 33.3% precipitant solution (100 mM phosphate/citrate pH 4.2, 40% (v/v) Ethanol, 5% (w/v) PEG 1000) and 16.7% of seed stock solution.

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon