4YYO
Resting state of rat cysteine dioxygenase C164S variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | IMAGE PLATE |
Collection date | 2014-11-23 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54187 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 57.800, 57.800, 123.070 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.085 - 1.770 |
R-factor | 0.1769 |
Rwork | 0.175 |
R-free | 0.20800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kwj |
RMSD bond length | 0.008 |
RMSD bond angle | 1.079 |
Data reduction software | MOSFLM (7.1.0) |
Data scaling software | d*TREK |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9-1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 21.090 | 21.090 | 1.810 |
High resolution limit [Å] | 1.770 | 8.850 | 1.770 |
Rmerge | 0.088 | 0.049 | 0.321 |
Rpim | 0.034 | 0.020 | 0.121 |
Total number of observations | 165219 | 1324 | 9825 |
Number of reflections | 39258 | ||
<I/σ(I)> | 12.2 | 25.6 | 2.5 |
Completeness [%] | 99.9 | 93.4 | 100 |
Redundancy | 7.8 | 6.4 | 7.9 |
CC(1/2) | 0.996 | 0.997 | 0.946 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 291 | Hanging drops of 2 microL of 50 mg/mL C164S-CDO (10mM sodium phosphate, 20 mM NaCl, pH 7.5) and 2 microL reservoir buffer containing seeds from WT-CDO were allowed to equilibrate above the reservoir buffer (26% (w/v) polyethylene glycol 4000, 200 mM ammonium acetate, 100 mM sodium citrate) |