4YYK
Crystal structure of BRD9 Bromodomain bound to a crotonyllysine peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-01 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | P 1 |
Unit cell lengths | 24.840, 34.730, 129.080 |
Unit cell angles | 89.88, 89.81, 69.45 |
Refinement procedure
Resolution | 32.270 - 1.790 |
R-factor | 0.2271 |
Rwork | 0.225 |
R-free | 0.26120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3hme |
RMSD bond length | 0.028 |
RMSD bond angle | 2.846 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.740 |
High resolution limit [Å] | 1.680 | 3.620 | 1.680 |
Rmerge | 0.089 | 0.077 | 0.617 |
Total number of observations | 88233 | ||
Number of reflections | 36333 | ||
<I/σ(I)> | 13 | ||
Completeness [%] | 96.6 | 93.5 | 99.9 |
Redundancy | 3.7 | 4.5 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | 0.1 M MES, pH 6.5, 15% w/v PEG550 MME |