4YYI
Crystal structure of BRD9 Bromodomain bound to an acetylated peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-02-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 |
Unit cell lengths | 24.746, 34.602, 129.361 |
Unit cell angles | 88.79, 90.00, 68.92 |
Refinement procedure
Resolution | 32.280 - 1.500 |
R-factor | 0.2077 |
Rwork | 0.206 |
R-free | 0.24220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3hme |
RMSD bond length | 0.028 |
RMSD bond angle | 2.752 |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.8.0069) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.550 |
High resolution limit [Å] | 1.500 | 3.230 | 1.500 |
Rmerge | 0.050 | 0.041 | 0.304 |
Total number of observations | 138541 | ||
Number of reflections | 60687 | ||
<I/σ(I)> | 11.1 | ||
Completeness [%] | 95.1 | 94.5 | 94 |
Redundancy | 2.3 | 2.2 | 2.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | 0.1 M Bis-Tris, pH 6.5, 25% w/v PEG3350 |