4YYH
Crystal structure of BRD9 Bromodomain bound to a crotonyllysine peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-12-01 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 126.147, 35.700, 65.019 |
Unit cell angles | 90.00, 99.01, 90.00 |
Refinement procedure
Resolution | 29.920 - 1.740 |
R-factor | 0.2142 |
Rwork | 0.212 |
R-free | 0.25980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3hme |
RMSD bond length | 0.022 |
RMSD bond angle | 2.001 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.800 |
High resolution limit [Å] | 1.740 | 3.750 | 1.740 |
Rmerge | 0.050 | 0.035 | 0.573 |
Total number of observations | 108728 | ||
Number of reflections | 29841 | ||
<I/σ(I)> | 11.8 | ||
Completeness [%] | 99.8 | 98.7 | 100 |
Redundancy | 3.6 | 3.6 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 277 | 0.1 M sodium citrate, pH 5.5, 0.2 M sodium chloride, 20% w/v PEG3350 |