Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YXZ

Computationally designed left-handed alpha/alpha toroid with 9 repeats

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2015-02-27
DetectorRIGAKU SATURN 944+
Wavelength(s)1.54
Spacegroup nameP 21 21 21
Unit cell lengths41.736, 72.019, 86.186
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.980 - 2.496
R-factor0.2346
Rwork0.225
R-free0.32790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Computationally designed molecule
RMSD bond length0.008
RMSD bond angle1.038
Data scaling softwareHKL-2000
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.540
High resolution limit [Å]2.4966.7802.496
Rmerge0.0750.0520.258
Rmeas0.0790.0550.292
Rpim0.0230.0160.133
Total number of observations94932
Number of reflections9450
<I/σ(I)>14.5
Completeness [%]99.298.491.2
Redundancy1010.84.5
CC(1/2)0.9980.960
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.42980.1 M Sodium citrate, 1.0 M Ammonium phosphate monobasic

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon