4YT4
Iron guanylylpyridinol (FeGP) cofactor-reconstituted HmdII from Methanocaldococcus jannaschii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-08-29 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 59.810, 59.810, 183.430 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.760 - 2.200 |
R-factor | 0.1866 |
Rwork | 0.184 |
R-free | 0.22550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | HmdII from M. jannaschii |
RMSD bond length | 0.014 |
RMSD bond angle | 1.896 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.300 | |
High resolution limit [Å] | 2.200 | 12.000 | 2.200 |
Rmerge | 0.084 | 0.052 | 0.315 |
Rmeas | 0.088 | 0.055 | 0.374 |
Total number of observations | 178596 | ||
Number of reflections | 17675 | 142 | 2088 |
<I/σ(I)> | 17.17 | 39.35 | 3.7 |
Completeness [%] | 99.5 | 98.6 | 96.6 |
Redundancy | 10.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.2 | 281 | 50% (v/v) PEG200, 0.1 M Na/K-phosphate, 0.2 M NaCl |