4YRJ
Crystal structure of T. cruzi Histidyl-tRNA synthetase in complex with 4-chlorobenzene-1,2-diamine (Chem 256)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-20 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 64.875, 119.306, 66.230 |
Unit cell angles | 90.00, 92.61, 90.00 |
Refinement procedure
Resolution | 29.830 - 2.300 |
R-factor | 0.2067 |
Rwork | 0.205 |
R-free | 0.24530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3lc0 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.038 |
Data reduction software | DENZO |
Data scaling software | Aimless (0.1.27) |
Phasing software | REFMAC |
Refinement software | REFMAC (refmac_5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.830 | 29.830 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.084 | 0.037 | 0.658 |
Rpim | 0.051 | 0.024 | 0.410 |
Total number of observations | 80135 | 1223 | 6859 |
Number of reflections | 21706 | ||
<I/σ(I)> | 8.7 | 25.8 | 1.7 |
Completeness [%] | 97.2 | 94.9 | 89.2 |
Redundancy | 3.7 | 3.2 | 3.5 |
CC(1/2) | 0.997 | 0.996 | 0.681 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.2 M ammonium sulfate, 23 % to 28 % PEG 3350, 0.1 M sodium citrate pH 4.8 to 5.3, 1 mM TCEP |