Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YPR

Crystal Structure of D144N MutY bound to its anti-substrate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyCCD
Collection date2014-03-13
DetectorADSC QUANTUM 315
Wavelength(s)0.98
Spacegroup nameP 61
Unit cell lengths105.272, 105.272, 235.374
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution85.014 - 2.590
R-factor0.1724
Rwork0.169
R-free0.22800
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1rrq
RMSD bond length0.012
RMSD bond angle1.446
Data reduction softwareXDS
Data scaling softwareSCALA (0.1.27)
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]117.6902.730
High resolution limit [Å]2.5902.590
Rmerge0.1191.117
Rpim0.054
Total number of observations262741
Number of reflections45851
<I/σ(I)>15.51.8
Completeness [%]100.0100
Redundancy5.75.8
CC(1/2)0.996
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.6298100 mM Tris, pH 8.6, 1.75 M (NH4)2SO4

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon