4YOK
Crystal structure of a DUF3823 family protein (PARMER_04126) from Parabacteroides merdae ATCC 43184 at 1.80 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-12-07 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.97947 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.866, 66.212, 68.593 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.531 - 1.800 |
R-factor | 0.1753 |
Rwork | 0.173 |
R-free | 0.21410 |
Structure solution method | SAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.050 |
Data reduction software | XDS |
Data scaling software | XDS (November 3, 2014 BUILT=20141118) |
Phasing software | SHELX |
Refinement software | BUSTER-TNT (2.10.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 26.531 | 1.860 | |
High resolution limit [Å] | 1.800 | 3.870 | 1.800 |
Rmerge | 0.062 | 0.026 | 0.649 |
Rmeas | 0.078 | 0.033 | 0.821 |
Total number of observations | 87402 | ||
Number of reflections | 18276 | 3361 | 3161 |
<I/σ(I)> | 11.04 | 31.3 | 1.5 |
Completeness [%] | 99.0 | 97.4 | 98.3 |
Redundancy | 2.58 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.33 | 293 | 0.2M magnesium chloride, 32.0% polyethylene glycol 1000, 0.01M GSH (L-Glutathione reduced), GSSG (L-Glutathione oxidized), 0.1M sodium cacodylate pH 6.33 |