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4YNI

Iron free succinate bound rat cysteine dioxygenase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU
Temperature [K]93
Detector technologyIMAGE PLATE
Collection date2013-12-02
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54187
Spacegroup nameP 43 21 2
Unit cell lengths57.690, 57.690, 121.870
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution41.890 - 2.404
R-factor0.1776
Rwork0.175
R-free0.22440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4kwj
RMSD bond length0.010
RMSD bond angle1.068
Data reduction softwareMOSFLM (7.1.0)
Data scaling softwareAimless (0.3.11)
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX (1.9-1692)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.89041.8902.490
High resolution limit [Å]2.4009.0002.400
Rmerge0.1340.0610.756
Rpim0.0440.0220.275
Total number of observations8549316397266
Number of reflections15515
<I/σ(I)>11.517.13.6
Completeness [%]100.099.5100
Redundancy107.68.6
CC(1/2)0.9960.9950.868
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.2291Hanging drops of 1 microL of 15 mg/mL WT-CDO (10mM sodiumphosphate, 20mM NaCl pH 7.5) and 3 microL reservoir buffer were allowed to equilibrate above the reservoir buffer (25% (w/v) polyethylene glycol 1500, 13 mM succinate, 44 mM mono sodium phosphate, 44 mM glycine) and 0.6 microL WT-CDO seeds (grown in the reservoir buffer)

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PDB entries from 2024-09-11

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