4YHR
Crystal Structure of Yeast Proliferating Cell Nuclear Antigen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-21 |
Detector | NOIR-1 |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 3 |
Unit cell lengths | 124.259, 124.259, 124.259 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.465 - 2.950 |
R-factor | 0.2477 |
Rwork | 0.246 |
R-free | 0.27330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1plq |
RMSD bond length | 0.004 |
RMSD bond angle | 0.710 |
Data scaling software | d*TREK (9.9.9.5L) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.470 | 37.470 | 3.060 |
High resolution limit [Å] | 2.950 | 6.350 | 2.950 |
Rmerge | 0.109 | 0.070 | 0.893 |
Total number of observations | 302153 | 29976 | 30287 |
Number of reflections | 13746 | ||
<I/σ(I)> | 12.2 | 32.8 | 2.1 |
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 21.82 | 20.37 | 22.26 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | Protein solution: 15 mg/mL protein in 20 mM HEPES and 150 mM NaCL at pH 7.5. Crystallization solution: 2.2M ammonium sulfate, 0.2M ammonium fluoride. Hanging drop was 50% protein solution, 50% crystallization solution |