Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YH5

Lipomyces starkeyi levoglucosan kinase bound to ADP and Manganese

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2012-07-12
DetectorRAYONIX MX-300
Wavelength(s)1.89199
Spacegroup nameP 41 21 2
Unit cell lengths114.440, 114.440, 232.484
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.210 - 1.900
R-factor0.156
Rwork0.155
R-free0.17400
Structure solution methodSAD
RMSD bond length0.007
RMSD bond angle1.069
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwarePHENIX
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.2102.000
High resolution limit [Å]1.9001.900
Rmerge0.1040.569
Number of reflections121746
<I/σ(I)>4.2
Completeness [%]99.9
Redundancy19.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.2293Equal volumes of reservoir buffer (18% PEG 4000, 0.1 M sodium acetate, 0.1 M Tris pH 7.2) and LGK (7 mg/ml) in crystallization buffer (50 mM NaCl, 2 mM ADP, 5 mM Manganese(II) chloride tetrahydrate, 25 mM levoglucosan, 0.5 mM TCEP, 20 mM Tris pH 7.5) were mixed.

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon