4YH5
Lipomyces starkeyi levoglucosan kinase bound to ADP and Manganese
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-07-12 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 1.89199 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 114.440, 114.440, 232.484 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.210 - 1.900 |
R-factor | 0.156 |
Rwork | 0.155 |
R-free | 0.17400 |
Structure solution method | SAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.069 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.210 | 2.000 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.104 | 0.569 |
Number of reflections | 121746 | |
<I/σ(I)> | 4.2 | |
Completeness [%] | 99.9 | |
Redundancy | 19.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 293 | Equal volumes of reservoir buffer (18% PEG 4000, 0.1 M sodium acetate, 0.1 M Tris pH 7.2) and LGK (7 mg/ml) in crystallization buffer (50 mM NaCl, 2 mM ADP, 5 mM Manganese(II) chloride tetrahydrate, 25 mM levoglucosan, 0.5 mM TCEP, 20 mM Tris pH 7.5) were mixed. |