4YGT
Crystal structure of a DUF4309 family protein (YjgB) from Bacillus subtilis subsp. subtilis str. 168 at 2.13 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-07-28 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9793,0.7514,0.9791 |
Spacegroup name | P 61 |
Unit cell lengths | 90.830, 90.830, 41.900 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.416 - 2.130 |
R-factor | 0.1933 |
Rwork | 0.191 |
R-free | 0.23130 |
Structure solution method | MAD |
RMSD bond length | 0.010 |
RMSD bond angle | 1.150 |
Data scaling software | XSCALE (January 10, 2014 BUILT=20140307) |
Phasing software | SHELX |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.416 | 45.416 | 2.210 |
High resolution limit [Å] | 2.130 | 4.570 | 2.130 |
Rmerge | 0.124 | 0.045 | 1.635 |
Rmeas | 0.130 | 0.048 | 1.726 |
Total number of observations | 120232 | ||
Number of reflections | 11231 | 1181 | 1159 |
<I/σ(I)> | 14.58 | 46.5 | 1.9 |
Completeness [%] | 99.9 | 99.5 | 99.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.2M sodium sulfate, 20% polyethylene glycol 3350 |