4YCS
Crystal structure of putative lipoprotein from Peptoclostridium difficile 630 (fragment)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-08-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.755, 119.501, 185.912 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.980 |
R-factor | 0.18067 |
Rwork | 0.180 |
R-free | 0.22628 |
Structure solution method | SAD |
RMSD bond length | 0.015 |
RMSD bond angle | 1.457 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | Auto-Rickshaw |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.010 |
High resolution limit [Å] | 1.980 | 1.980 |
Rmerge | 0.123 | 0.848 |
Number of reflections | 57544 | |
<I/σ(I)> | 12.4 | 2.25 |
Completeness [%] | 96.8 | 97 |
Redundancy | 4.8 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 289 | 0.09 M Malonic Acid, 0.013 M Ammonium Citrate Tribasic, 0.006 M Succinic Acid, 0.015 M DL-Malic Acid, 0.02 M Sodium Acetate, 0.025 M Sodium Formate, 0.008 M Ammonium Tartrate Dibasic, 0.1 M HEPES:NaOH pH 7.0, 10% (w/v) PEG MME 5000, cryo 25% glycerol |