Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YB8

Ca. Korarchaeum cryptofilum dinucleotide forming Acetyl-coenzyme A synthetase 1 in complex with phosphate and ADP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2013-06-28
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.984
Spacegroup nameP 21 21 21
Unit cell lengths106.071, 110.615, 125.709
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution83.043 - 1.900
R-factor0.1835
Rwork0.182
R-free0.22050
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.201
Data reduction softwareXDS (September 26, 2012)
Data scaling softwareAimless (0.3.11)
Phasing softwarePHASER
Refinement softwarePHENIX ((phenix.refine: 1.8.4_1496))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]110.6101.930
High resolution limit [Å]1.9001.900
Rmerge0.1654.603
Number of reflections116787
<I/σ(I)>9.40.5
Completeness [%]100.099.5
Redundancy139.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP278100 mM Tris/HCl pH 8.7, 14% (w/v) PEG6000

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon