4Y9T
CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM AGROBACTERIUM VITIS S4 (Avi_5305, TARGET EFI-511224) WITH BOUND ALPHA-D-GLUCOSAMINE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-12 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.634, 63.611, 127.394 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.035 - 1.801 |
R-factor | 0.1499 |
Rwork | 0.148 |
R-free | 0.18920 |
Structure solution method | SAD |
RMSD bond length | 0.011 |
RMSD bond angle | 1.321 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | SHELX |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 1.830 |
High resolution limit [Å] | 1.800 | 4.890 | 1.800 |
Rmerge | 0.135 | 0.124 | 0.740 |
Rmeas | 0.141 | 0.129 | 0.768 |
Rpim | 0.038 | 0.035 | 0.203 |
Total number of observations | 333857 | ||
Number of reflections | 25086 | ||
<I/σ(I)> | 7.2 | ||
Completeness [%] | 88.2 | 97.8 | 87.1 |
Redundancy | 13.3 | 13.2 | 13.6 |
CC(1/2) | 0.993 | 0.899 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Protein (40.65 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM D-glucosamine); Reservoir (35 %(w/v) PEG 4000); Cryoprotection (Reservoir, Pause in air during transfer to liquid N2) |