Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4Y3D

Endothiapepsin in complex with fragment 321

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.3
Synchrotron siteBESSY
Beamline14.3
Temperature [K]100
Detector technologyCCD
Collection date2014-02-14
DetectorMAR CCD 165 mm
Wavelength(s)0.89440
Spacegroup nameP 1 21 1
Unit cell lengths45.241, 72.909, 52.628
Unit cell angles90.00, 109.43, 90.00
Refinement procedure
Resolution28.065 - 1.482
R-factor0.1189
Rwork0.117
R-free0.15700
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)3pcw
RMSD bond length0.007
RMSD bond angle1.184
Data reduction softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.8.4_1492)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.6701.570
High resolution limit [Å]1.4801.480
Rmerge0.539
Number of reflections53444
<I/σ(I)>16.22.7
Completeness [%]99.799.6
Redundancy4.24.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.62900.1M ammonium acetate, 0.1M sodium acetate, 50% PEG 4000

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon