Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4Y1O

Oceanobacillus iheyensis group II intron domain 1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2014-08-04
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.97950
Spacegroup nameP 1 21 1
Unit cell lengths84.345, 132.250, 84.561
Unit cell angles90.00, 91.87, 90.00
Refinement procedure
Resolution40.250 - 2.950
R-factor0.1811
Rwork0.179
R-free0.22380
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)model from an isomorphous crystal
RMSD bond length0.005
RMSD bond angle1.099
Data reduction softwareXDS (January 10, 2014)
Data scaling softwareXDS (January 10, 2014)
Phasing softwarePHASER (2.5.2)
Refinement softwarePHENIX ((phenix.refine: 1.9_1692))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.2503.060
High resolution limit [Å]2.9502.950
Number of reflections75788
<I/σ(I)>19.311.65
Completeness [%]98.794.95
Redundancy6.86.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7298.1580 mM NaCl, 24 mM KCl, 5 mM MgCl2, 40 mM NaCacodylate, 17% MPD, 8 mM spermine-4HCl

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon