4Y04
Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis (Space)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2014-11-25 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.98 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 99.140, 103.280, 175.310 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 1.660 |
R-factor | 0.18807 |
Rwork | 0.186 |
R-free | 0.22473 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y01 |
RMSD bond length | 0.020 |
RMSD bond angle | 1.955 |
Data reduction software | XDS |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.700 |
High resolution limit [Å] | 1.660 | 1.660 |
Number of reflections | 105914 | |
<I/σ(I)> | 19.8 | 2.5 |
Completeness [%] | 99.6 | 98.9 |
Redundancy | 6.2 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIQUID DIFFUSION | 293 | tri-potassium citrate, PEG 8000 Crystallisation under micro gravity at ISS Kibo. |