4Y02
Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis (Ground)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
| Synchrotron site | Photon Factory |
| Beamline | AR-NE3A |
| Temperature [K] | 95 |
| Detector technology | CCD |
| Collection date | 2014-06-28 |
| Detector | ADSC QUANTUM 270 |
| Wavelength(s) | 1.0 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 99.330, 103.590, 177.330 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 40.000 - 1.960 |
| R-factor | 0.21789 |
| Rwork | 0.215 |
| R-free | 0.27463 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y04 |
| RMSD bond length | 0.018 |
| RMSD bond angle | 1.858 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0123) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 40.000 | 2.040 |
| High resolution limit [Å] | 1.890 | 1.890 |
| Number of reflections | 71425 | |
| <I/σ(I)> | 15 | 2.4 |
| Completeness [%] | 97.5 | 92 |
| Redundancy | 6.1 | 2.6 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | tri-potassium citrate, PEG 8000 |
