4Y01
Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2012-12-20 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 99.788, 115.486, 147.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.460 |
R-factor | 0.1866 |
Rwork | 0.184 |
R-free | 0.23339 |
Structure solution method | MAD |
RMSD bond length | 0.015 |
RMSD bond angle | 1.757 |
Phasing software | SHARP |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.520 |
High resolution limit [Å] | 2.460 | 2.460 |
Number of reflections | 62234 | |
<I/σ(I)> | 12.6 | 2.1 |
Completeness [%] | 99.6 | 99.5 |
Redundancy | 6.6 | 3.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | BICINE pH 9.0, sodium chloride, PEG MME 550 |