4Y01
Crystal structure of dipeptidyl peptidase 11 (DPP11) from Porphyromonas gingivalis
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE BL-17A |
| Synchrotron site | Photon Factory |
| Beamline | BL-17A |
| Temperature [K] | 95 |
| Detector technology | CCD |
| Collection date | 2012-12-20 |
| Detector | ADSC QUANTUM 270 |
| Wavelength(s) | 0.98 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 99.788, 115.486, 147.570 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 40.000 - 2.460 |
| R-factor | 0.1866 |
| Rwork | 0.184 |
| R-free | 0.23339 |
| Structure solution method | MAD |
| RMSD bond length | 0.015 |
| RMSD bond angle | 1.757 |
| Phasing software | SHARP |
| Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 40.000 | 2.520 |
| High resolution limit [Å] | 2.460 | 2.460 |
| Number of reflections | 62234 | |
| <I/σ(I)> | 12.6 | 2.1 |
| Completeness [%] | 99.6 | 99.5 |
| Redundancy | 6.6 | 3.1 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | BICINE pH 9.0, sodium chloride, PEG MME 550 |
