4XMD
Crystal structure of nitrophorin 7 from Rhodnius prolixus at pH 7.8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-07-28 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.91841 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.312, 66.807, 39.026 |
Unit cell angles | 90.00, 116.87, 90.00 |
Refinement procedure
Resolution | 30.420 - 1.600 |
R-factor | 0.1376 |
Rwork | 0.135 |
R-free | 0.19160 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mvf |
RMSD bond length | 0.006 |
RMSD bond angle | 1.026 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX ((phenix.refine: dev_1565)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.420 | 1.640 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.040 | 0.486 |
Number of reflections | 23143 | |
<I/σ(I)> | 20.5 | 3 |
Completeness [%] | 99.4 | 99.8 |
Redundancy | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 25%(w/v) PEG 3350, 0.1 M bis-Tris propane pH 7.8, 0.02 M HEPES pH 6.8, 0.25%(w/v) naphthalene-1,3,6-trisulfonic acid trisodium salt hydrate, 0.25%(w/v) 2,6-naphthalenedisulfonic acid disodium salt, 0.25%(w/v) 4-aminobenzoic acid, 0.25%(w/v) 5-sulfosalicylic acid dehydrate. |