4XKD
Crystal structure of hemagglutinin from Taiwan (2013) H6N1 influenza virus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97945 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 184.446, 98.963, 132.863 |
Unit cell angles | 90.00, 126.12, 90.00 |
Refinement procedure
Resolution | 49.481 - 2.482 |
R-factor | 0.2091 |
Rwork | 0.207 |
R-free | 0.25660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4m4y |
Data reduction software | HKL-2000 (705b) |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.482 | 6.780 | 2.482 |
Rmerge | 0.094 | 0.052 | 0.448 |
Rmeas | 0.110 | 0.060 | 0.530 |
Rpim | 0.056 | 0.031 | 0.278 |
Total number of observations | 240934 | ||
Number of reflections | 66521 | ||
<I/σ(I)> | 4.7 | ||
Completeness [%] | 98.3 | 98.9 | 94.4 |
Redundancy | 3.6 | 3.7 | 3.2 |
CC(1/2) | 0.989 | 0.785 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293.15 | 10mM NiCl2, 0.1M Tris pH 8.5, 20% (w/v) MPEG 2000 and 20% glycerol |