4XK0
Crystal structure of a tetramolecular RNA G-quadruplex in potassium
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-08-26 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.8266 |
Spacegroup name | P 4 21 2 |
Unit cell lengths | 33.133, 33.133, 54.843 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.540 - 1.080 |
Rwork | 0.144 |
R-free | 0.14400 |
Structure solution method | SAD |
Data scaling software | HKL-2000 |
Phasing software | SHELX |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.090 |
High resolution limit [Å] | 1.070 | 2.900 | 1.070 |
Rmerge | 0.112 | 0.128 | 0.187 |
Rmeas | 0.117 | 0.135 | 0.198 |
Rpim | 0.034 | 0.041 | 0.061 |
Total number of observations | 310744 | ||
Number of reflections | 25610 | ||
<I/σ(I)> | 31.8 | ||
Completeness [%] | 97.4 | 95.5 | 53.5 |
Redundancy | 12.1 | 11.3 | 9.4 |
CC(1/2) | 0.982 | 0.981 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 294 | 40 mM potassium cacodylic acid (pH 6.0), 35% 2-methyl-2,4-pentanediol, 5 mM spermine hydrochloride, 80 mM potassium chloride, 0.5 mM DHX36 fragment, 20 mM barium chloride |