4XGK
Crystal structure of UDP-galactopyranose mutase from Corynebacterium diphtheriae in complex with 2-[4-(4-chlorophenyl)-7-(2-thienyl)-2-thia-5,6,8,9-tetrazabicyclo[4.3.0]nona-4,7,9-trien-3-yl]acetic
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-09-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.1 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 179.362, 179.362, 145.236 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.771 - 2.652 |
R-factor | 0.1844 |
Rwork | 0.182 |
R-free | 0.22690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1i8t |
RMSD bond length | 0.009 |
RMSD bond angle | 1.300 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.740 |
High resolution limit [Å] | 2.650 | 5.710 | 2.650 |
Rmerge | 0.076 | 0.046 | 0.790 |
Rmeas | 0.080 | 0.049 | 0.834 |
Rpim | 0.025 | 0.016 | 0.265 |
Total number of observations | 391794 | ||
Number of reflections | 40032 | ||
<I/σ(I)> | 7.9 | ||
Completeness [%] | 99.2 | 99.4 | 98.6 |
Redundancy | 9.8 | 9.1 | 9.7 |
CC(1/2) | 0.999 | 0.818 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | 100 mM Bis-Tris, 2 M ammonium sulfate |