4XFY
Structure of the native full-length dehydrated HIV-1 capsid protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2014-03-25 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00012 |
Spacegroup name | P 6 |
Unit cell lengths | 87.137, 87.137, 55.881 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.000 - 2.800 |
R-factor | 0.2099 |
Rwork | 0.208 |
R-free | 0.25010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3h47 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.121 |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER (2.5.2) |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 55.880 | 55.880 | 2.960 |
High resolution limit [Å] | 2.790 | 8.380 | 2.790 |
Rmerge | 0.105 | 0.027 | 1.269 |
Rpim | 0.034 | 0.009 | 0.425 |
Total number of observations | 65579 | 2528 | 9367 |
Number of reflections | 6091 | ||
<I/σ(I)> | 19.8 | 67.1 | 1.8 |
Completeness [%] | 99.7 | 99.6 | 98.2 |
Redundancy | 10.8 | 10.2 | 9.8 |
CC(1/2) | 0.999 | 1.000 | 0.704 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | PEG3350, NaI, Sodium cacodylate |