4XFE
Crystal structure of a TRAP periplasmic solute binding protein from Pseudomonas putida F1 (Pput_1203), Target EFI-500184, with bound D-glucuronate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-10-13 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.9793 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 130.001, 35.054, 60.833 |
Unit cell angles | 90.00, 99.54, 90.00 |
Refinement procedure
Resolution | 26.503 - 1.400 |
R-factor | 0.1577 |
Rwork | 0.156 |
R-free | 0.18620 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.361 |
Data scaling software | Aimless (0.1.27) |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.990 | 59.990 | 1.430 |
High resolution limit [Å] | 1.400 | 7.410 | 1.400 |
Rmerge | 0.123 | 0.088 | 0.780 |
Rpim | 0.060 | 0.052 | 0.381 |
Total number of observations | 266420 | 1000 | 13874 |
Number of reflections | 53215 | ||
<I/σ(I)> | 9.2 | 16.6 | 2.3 |
Completeness [%] | 99.2 | 71.7 | 99.9 |
Redundancy | 5 | 3.5 | 5 |
CC(1/2) | 0.995 | 0.980 | 0.722 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | Protein (60.0 mg/ml, 10 mM HEPES pH 7.5, 5 mM DTT, 10 mM D-glucuronate); Reservoir (MCSG2(D3), 0.2M Lithium Sulfate, 0.1 M CAPS pH 10.5, 2.0 M Ammonium Sulfate); Cryoprotection (80% Reservoir, 20% glycerol) |