4XBD
1.45A resolution structure of Norovirus 3CL protease complex with a covalently bound dipeptidyl inhibitor (1R,2S)-2-({N-[(benzyloxy)carbonyl]-3-cyclohexyl-L-alanyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid (Orthorhombic P Form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-11-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.466, 66.907, 126.404 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.654 - 1.450 |
R-factor | 0.1738 |
Rwork | 0.172 |
R-free | 0.19930 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.020 |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER (2.5.2) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.940 | 45.940 | 1.480 |
High resolution limit [Å] | 1.450 | 7.670 | 1.450 |
Rmerge | 0.047 | 0.023 | 1.054 |
Total number of observations | 371208 | 2621 | 19453 |
Number of reflections | 57354 | ||
<I/σ(I)> | 18.9 | 62.6 | 1.8 |
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 6.5 | 5.6 | 6.5 |
CC(1/2) | 1.000 | 0.999 | 0.635 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% w/v PEG3350, 200 mM sodium thiocyanate |