4X7E
Crystal structure of norovirus GII.10 P domain in complex with Nano-85
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-08 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.973 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.940, 133.100, 67.570 |
Unit cell angles | 90.00, 112.54, 90.00 |
Refinement procedure
Resolution | 47.970 - 2.110 |
R-factor | 0.1901 |
Rwork | 0.189 |
R-free | 0.21820 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ONU was used for GII.10 P domain (molecule 1) and recently deposited PDB entry 4X7F for Nano-85 (molecule 2) |
RMSD bond length | 0.002 |
RMSD bond angle | 0.701 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.970 | 2.170 | |
High resolution limit [Å] | 2.110 | 9.440 | 2.110 |
Rmerge | 0.073 | 0.022 | 0.471 |
Rmeas | 0.090 | 0.026 | 0.575 |
Total number of observations | 134998 | ||
Number of reflections | 46632 | 527 | 3286 |
<I/σ(I)> | 11.63 | 41.92 | 2.24 |
Completeness [%] | 95.7 | 91.3 | 90.8 |
Redundancy | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | calcium acetate, PEG8000, sodium cacodylate |