4WVG
Crystal structure of the Type-I signal peptidase from Staphylococcus aureus (SpsB).
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-03-25 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.683, 63.565, 79.892 |
Unit cell angles | 90.00, 92.59, 90.00 |
Refinement procedure
Resolution | 19.440 - 2.050 |
R-factor | 0.1921 |
Rwork | 0.190 |
R-free | 0.24200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1anf |
RMSD bond length | 0.007 |
RMSD bond angle | 1.160 |
Data scaling software | XDS |
Phasing software | PHASER (2.5.2) |
Refinement software | REFMAC (5.8.0071) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.440 | 19.440 | 2.110 |
High resolution limit [Å] | 2.050 | 8.940 | 2.050 |
Rmerge | 0.211 | 0.027 | 1.577 |
Rpim | 0.082 | 0.011 | 0.608 |
Total number of observations | 275184 | 2937 | 21095 |
Number of reflections | 36318 | ||
<I/σ(I)> | 10.1 | 59.2 | 1.4 |
Completeness [%] | 99.8 | 91.1 | 99.8 |
Redundancy | 7.6 | 6.9 | 7.6 |
CC(1/2) | 0.994 | 0.999 | 0.528 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | 12 % PEG 8000, 20 % ethylene glycol, 0.2 M amino acids mix (0.2 M sodium-L-glutamate, 0.2 M DL-alanine, 0.2 M glycine, 0.2 M DL-lysine, 0.2 M DL-serine), 100 mM Tris.Cl pH 8.5 |