4WUX
Crystal Structure of Surfactant Protein-A DED Mutant (E171D/P175E/K203D) Complexed with Mannose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-03-21 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 63 |
Unit cell lengths | 96.944, 96.944, 44.994 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 14.963 - 1.900 |
R-factor | 0.1754 |
Rwork | 0.172 |
R-free | 0.20220 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4wr9 |
RMSD bond length | 0.020 |
RMSD bond angle | 1.539 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 15.000 | 15.000 | 1.970 |
High resolution limit [Å] | 1.900 | 4.070 | 1.900 |
Rmerge | 0.052 | 0.028 | 0.507 |
Total number of observations | 98492 | ||
Number of reflections | 18934 | ||
<I/σ(I)> | 23.8 | ||
Completeness [%] | 98.5 | 91.2 | 99.8 |
Redundancy | 5.2 | 5 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 290 | The crystal was grown in hanging drops using 10 mM sodium cacodylate (pH 6.0), 80 mM calcium acetate, 0-10% glycerol, and 4-10% (w/v) PEG 20,000 as a reservoir. Before freezing for x-ray data collection, crystal was soaked in reservoir solution of 10 mM calcium acetate without glycerol, but with stepwise additions of 5, 10, and 15% 2-methyl-2,4-pentanediol with 25% mannose for 10 minutes at each step |