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4WTM

CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-UAGG, RNA PRIMER 5'-PCC, MN2+, AND UDP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2013-08-08
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97872
Spacegroup nameP 65
Unit cell lengths140.370, 140.370, 92.430
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.990 - 2.150
R-factor0.186
Rwork0.185
R-free0.21600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4obc
RMSD bond length0.012
RMSD bond angle1.461
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0032)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.210
High resolution limit [Å]2.1502.150
Rmerge0.0550.492
Rmeas0.0590.029
Total number of observations450665
Number of reflections56292652
<I/σ(I)>25.074.1
Completeness [%]99.999.9
Redundancy88.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.6289NS5B AT 4.7 MG/ML IN 5 MM TRIS PH 7.5, 200 MM NH4OAC, 1 MM EDTA, 1 MM DTT AGAINST 25% PEG 550 MME, 50 MM MGCL2, 0.1 M HEPES PH 7.5 FOR CRYSTAL GROWTH SOAKED INTO 28% PEG 550 MME, 0.2 M AMMONIUM ACETATE, 0.05 M BISTRIS PROPANE PH 6.0, 0.05 M TRIS PH 7.2, 12 MM MNCL2, 20 MM UDP, 4 MM 5'-UAGG, 4 MM 5'-PCC, WITH 8% GLYCEROL AS CRYO-PROTECTANT, CRYSTAL TRACKING ID 247392A4, UNIQUE PUCK ID NRC3-7

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PDB entries from 2024-11-13

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