4WR9
Crystal Structure of Surfactant Protein-A DED Mutant (E171D/P175E/K203D)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-10-10 |
Detector | RIGAKU RAXIS IV |
Wavelength(s) | 1.5418 |
Spacegroup name | P 63 |
Unit cell lengths | 97.190, 97.190, 44.629 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 14.649 - 2.301 |
R-factor | 0.1689 |
Rwork | 0.165 |
R-free | 0.20030 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 3pak |
RMSD bond length | 0.013 |
RMSD bond angle | 0.759 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 15.000 | 15.000 | 2.380 |
High resolution limit [Å] | 2.300 | 4.900 | 2.300 |
Rmerge | 0.069 | 0.036 | 0.465 |
Total number of observations | 60818 | ||
Number of reflections | 10829 | ||
<I/σ(I)> | 18.3 | ||
Completeness [%] | 99.9 | 99.6 | 99.9 |
Redundancy | 5.6 | 5.7 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 290 | The crystals were grown in hanging drops with 10 mM sodium cacodylate (pH 6.0), 80 mM calcium acetate, 0-10% glycerol, and 4-10% (w/v) PEG 20,000 as the reservoir. Before freezing for x-ray data collection, crystals were soaked in reservoir solution of 10 mM calcium acetate without glycerol, but with stepwise additions of 5, 10, and 15% 2-methyl-2,4-pentanediol |