4WFA
The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-04-07 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.873,0.972,1.000 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 279.922, 279.922, 870.586 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 64.877 - 3.392 |
R-factor | 0.2038 |
Rwork | 0.202 |
R-free | 0.24280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wce |
RMSD bond length | 0.006 |
RMSD bond angle | 1.086 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Refinement software | PHENIX ((phenix.refine: 1.8.2_1309)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 200.000 | 200.000 | 3.460 |
High resolution limit [Å] | 3.400 | 9.230 | 3.400 |
Rmerge | 0.156 | 0.070 | 0.776 |
Rmeas | 0.170 | 0.077 | 0.895 |
Rpim | 0.061 | 0.029 | 0.419 |
Total number of observations | 1398748 | ||
Number of reflections | 246474 | ||
<I/σ(I)> | 5.7 | ||
Completeness [%] | 89.4 | 88.2 | 64.8 |
Redundancy | 5.7 | 5.6 | 2.8 |
CC(1/2) | 0.996 | 0.433 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.15 | Hepes, KCl, MgCl2, NH4Cl, MPD, EtOH, Spermidine |