4WF7
Crystal structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in the intramolecular isomerization catalysis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE BL13B1 |
Synchrotron site | NSRRC |
Beamline | BL13B1 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2014-06-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 96.250, 133.705, 196.614 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 2.210 |
R-factor | 0.1621 |
Rwork | 0.160 |
R-free | 0.19960 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tvu |
RMSD bond length | 0.010 |
RMSD bond angle | 1.414 |
Data reduction software | SCALEPACK |
Data scaling software | SCALEPACK |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 20.000 | 2.290 |
High resolution limit [Å] | 2.210 | 4.740 | 2.210 |
Rmerge | 0.151 | 0.048 | 0.787 |
Rmeas | 0.165 | 0.053 | 0.862 |
Rpim | 0.066 | 0.021 | 0.345 |
Total number of observations | 759037 | ||
Number of reflections | 129348 | ||
<I/σ(I)> | 5.3 | ||
Completeness [%] | 99.9 | 100 | 99.7 |
Redundancy | 5.9 | 5.8 | 5.6 |
CC(1/2) | 0.998 | 0.784 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 288 | 11% PEG 4000, 0.2M sodium acetate trihydrate, 0.3M Tris-HCl (pH 8.5), 5% glycerol |