4WC7
Structure of tRNA-processing enzyme complex 5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2014-06-18 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 58.870, 111.390, 127.920 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.835 - 3.102 |
R-factor | 0.2794 |
Rwork | 0.277 |
R-free | 0.32180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4wc2 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.580 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 3.180 | |
High resolution limit [Å] | 3.100 | 13.870 | 3.100 |
Rmerge | 0.137 | 0.035 | 1.590 |
Rmeas | 0.149 | 0.039 | 1.727 |
Total number of observations | 101099 | ||
Number of reflections | 15717 | 125 | 1104 |
<I/σ(I)> | 11.61 | 37.79 | 1.23 |
Completeness [%] | 99.2 | 56.6 | 98.5 |
Redundancy | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | isopropanol, potassium chloride, magnesium chloride, sodium cacodylate |