4WC5
Structure of tRNA-processing enzyme complex 3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2014-06-18 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 58.870, 111.270, 127.860 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.824 - 3.410 |
R-factor | 0.2691 |
Rwork | 0.267 |
R-free | 0.30860 |
Starting model (for MR) | 4wc2 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.531 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 3.490 | |
High resolution limit [Å] | 3.410 | 15.230 | 3.410 |
Rmerge | 0.167 | 0.028 | 2.299 |
Rmeas | 0.181 | 0.031 | 2.478 |
Total number of observations | 86262 | ||
Number of reflections | 11953 | 91 | 867 |
<I/σ(I)> | 11.14 | 49.73 | 1.01 |
Completeness [%] | 99.1 | 52.3 | 98.3 |
Redundancy | 7.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | isopropanol, potassium chloride, magnesium chloride, sodium cacodylate |