4WBY
tRNA-processing enzyme (apo form I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2010-05-18 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.510, 67.740, 127.500 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.940 - 1.500 |
R-factor | 0.1568 |
Rwork | 0.156 |
R-free | 0.17610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vfg |
RMSD bond length | 0.005 |
RMSD bond angle | 0.958 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.540 | |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.040 | 0.031 | 0.382 |
Rmeas | 0.043 | 0.034 | 0.404 |
Total number of observations | 719782 | ||
Number of reflections | 75966 | 752 | 5526 |
<I/σ(I)> | 30.42 | 54.59 | 6.13 |
Completeness [%] | 99.5 | 77.6 | 99.4 |
Redundancy | 9.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG3350, potassium sulfate |