4UOG
Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X6A |
Synchrotron site | NSLS |
Beamline | X6A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-01 |
Detector | ADSC QUANTUM 270 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 70.160, 135.370, 104.820 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.304 - 2.300 |
R-factor | 0.1915 |
Rwork | 0.188 |
R-free | 0.25690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4uof |
RMSD bond length | 0.009 |
RMSD bond angle | 1.189 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.300 | 2.400 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.170 | 0.700 |
Number of reflections | 21500 | |
<I/σ(I)> | 13.4 | 3.5 |
Completeness [%] | 95.0 | 97.7 |
Redundancy | 8.2 | 8.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 8.5 | 0.2 M AMMONIUM ACETATE, 0.1 M TRIS-HCL PH 8.5 AND 30% (V/V) 2-PROPANOL |