4TVI
X-ray crystal structure of an aminotransferase from Brucella abortus bound to the co-factor PLP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-04-30 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 93.990, 127.320, 47.690 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.088 - 2.100 |
R-factor | 0.1621 |
Rwork | 0.160 |
R-free | 0.21100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jxu |
RMSD bond length | 0.004 |
RMSD bond angle | 0.881 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: dev_1702)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.150 | |
High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
Rmerge | 0.095 | 0.021 | 0.371 |
Rmeas | 0.105 | 0.024 | 0.414 |
Total number of observations | 198080 | ||
Number of reflections | 33664 | 438 | 2370 |
<I/σ(I)> | 16.59 | 63.09 | 4.68 |
Completeness [%] | 98.3 | 96.5 | 94.8 |
Redundancy | 5.88 | 5.05 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.5 | 289 | MCSG1 A2 - 0.1 M CHES pH 9.50, 30% PEG3000 |