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4RK6

Crystal structure of LacI family transcriptional regulator CCPA from Weissella paramesenteroides, Target EFI-512926, with bound glucose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X29A
Synchrotron siteNSLS
BeamlineX29A
Temperature [K]100
Detector technologyCCD
Collection date2014-09-25
DetectorADSC QUANTUM 315r
Spacegroup nameP 43 21 2
Unit cell lengths102.564, 102.564, 128.055
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.760
R-factor0.16854
Rwork0.168
R-free0.19826
Structure solution methodSAD
RMSD bond length0.009
RMSD bond angle1.344
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareSHELX
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.790
High resolution limit [Å]1.7601.760
Rmerge0.0770.610
Number of reflections67129
<I/σ(I)>33.34.6
Completeness [%]98.3100
Redundancy1211.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7294protein in 10 mM Bis-Tris, 500 mM sodium chloride, 10% glycerol, 5 mM DTT, TEV protease (1:100 ratio), reservoir: 0.641 M malonic acid, 0.088 M ammonium citrate tribasic, 0.042 M succinic acid, 0.105 M DL-malic acid, 0.14 M sodium acetate, 0.175 M sodium formate, 0.056 M ammonium tartrate dibasic, cryoprotectant = reservoir + 100 mM glucose, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K

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PDB entries from 2026-01-28

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