4RGJ
Apo crystal structure of CDPK4 from Plasmodium falciparum, PF3D7_0717500
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-08-21 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 70.654, 75.548, 92.562 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.162 - 2.303 |
R-factor | 0.2041 |
Rwork | 0.201 |
R-free | 0.25460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4qox |
RMSD bond length | 0.008 |
RMSD bond angle | 1.184 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.162 | 30.000 | 2.340 |
High resolution limit [Å] | 2.303 | 6.230 | 2.303 |
Rmerge | 0.065 | 0.029 | 0.496 |
Number of reflections | 22486 | ||
<I/σ(I)> | 9.6 | 2.76 | |
Completeness [%] | 99.9 | 98.6 | 100 |
Redundancy | 6 | 5.3 | 6.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 5% glycerol, 1 mM Nilotinib, 5 mM TCEP, 28% PEG2000 MME, 0.1 M Bis-Tris, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K |