4QXA
Crystal structure of the Rab9A-RUTBC2 RBD complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-22 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9789 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.776, 59.944, 127.840 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.725 - 2.300 |
R-factor | 0.1831 |
Rwork | 0.181 |
R-free | 0.23280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yzl |
RMSD bond length | 0.009 |
RMSD bond angle | 1.216 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.7.2_869) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.380 |
High resolution limit [Å] | 2.300 | 4.950 | 2.300 |
Rmerge | 0.079 | 0.044 | 0.354 |
Number of reflections | 18655 | ||
<I/σ(I)> | 12.9 | ||
Completeness [%] | 98.7 | 92.8 | 100 |
Redundancy | 5.7 | 5.2 | 6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 289 | 0.2M ammonium acetate, 0.1M sodium acetate, 20% (w/v) PEG 4000, pH 5.0, vapor diffusion, hanging drop, temperature 289K |