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4QGH

S.aureus TMK in complex with potent inhibitor compound 47

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 31-ID
Synchrotron siteAPS
Beamline31-ID
Temperature [K]140
Detector technologyCCD
Collection date2011-03-30
DetectorRAYONIX MX-225
Wavelength(s)0.978
Spacegroup nameP 1 21 1
Unit cell lengths45.639, 90.140, 50.455
Unit cell angles90.00, 99.37, 90.00
Refinement procedure
Resolution28.360 - 1.780
R-factor0.1779
Rwork0.176
R-free0.20740
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.030
Data reduction softwarePROCESS
Data scaling softwareSCALA (3.3.16)
Phasing softwareAMoRE
Refinement softwareBUSTER-TNT (BUSTER 2.11.5)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]29.29729.2971.880
High resolution limit [Å]1.7815.6301.780
Rmerge0.0210.168
Number of reflections37864
<I/σ(I)>20.325.84.6
Completeness [%]98.592.796.7
Redundancy3.53.53.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293To obtain the inhibitor bound crystal form of TMK-S.aureus crystals were initially grown in the absence of compound using the sitting drop method at 293 K with a reservoir solution of 100 mM PCPT (propionate-cacodylate-bistris propane buffer) pH 7-8, 21-24% PEG 3350, 200 mM Mg2Cl using 1:1 protein:reservoir solution with the protein solution at 13 mg/mL. Crystals were harvested and soaked overnight in a solution containing 100 mM PCPT, 35% PEG 3350, 200 mM Mg2Cl and 1-2 mM or compound from a 100 mM DMSO stock. After soaking the crystals were cryoprotected by soaking for 15 minutes in compound-soak solution supplemented with 20% ethylene glycol, VAPOR DIFFUSION, SITTING DROP

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PDB entries from 2024-11-06

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