4Q8H
Structure of the Saccharomyces cerevisiae PAN2 pseudoubiquitin-hydrolase-RNase module
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-4 |
Synchrotron site | ESRF |
Beamline | ID14-4 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-07-30 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.939080 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 91.712, 115.505, 257.449 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.013 - 3.100 |
R-factor | 0.2406 |
Rwork | 0.239 |
R-free | 0.27530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ENTRIES 1WLJ AND 4Q8G |
RMSD bond length | 0.004 |
RMSD bond angle | 0.872 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | AutoSol |
Refinement software | PHENIX ((phenix.refine: dev_1647)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.013 | 3.320 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.133 | 2.488 |
Number of reflections | 25287 | |
<I/σ(I)> | 9.6 | 0.7 |
Completeness [%] | 100.0 | 100 |
Redundancy | 5.3 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 100 mM sodium acetate, pH 5.5, 10% v/v PEG200, VAPOR DIFFUSION, SITTING DROP, temperature 293K |