4PYT
Crystal structure of a MurB family EP-UDP-N-acetylglucosamine reductase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-10-10 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97872 |
Spacegroup name | H 3 2 |
Unit cell lengths | 106.786, 106.786, 201.085 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.167 - 1.853 |
R-factor | 0.205 |
Rwork | 0.204 |
R-free | 0.22710 |
Structure solution method | PDB ENTRY 3TX1 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.417 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 10000.000 | 10000.000 | 1.880 |
High resolution limit [Å] | 1.850 | 5.020 | 1.850 |
Rmerge | 0.092 | 0.065 | 0.860 |
Number of reflections | 37611 | ||
<I/σ(I)> | 10.2 | ||
Completeness [%] | 99.8 | 99.2 | 98.4 |
Redundancy | 6.9 | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 277 | Final crystallization conditions contained 1.5 micro l reservoir solution (0.5M MgCl2, 0.1M Tris pH 8.5 and 20% PEG 8000) and 1.5 micro L of 8.0 mg/ml LucY in 150mM NaCl, 50mM Tris pH 7.5.. Crystals were cryoprotected by transferring into Mitegen s LV CryoOil (MiTeGen, LLC) prior to mounting and were flash-frozen in liquid nitrogen. , VAPOR DIFFUSION, HANGING DROP, temperature 277K |