4PTK
Crystal structure of Staphylococcal IMPase-I complex with 3Mg2+ and Phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 60.428, 62.455, 140.497 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.720 - 2.503 |
R-factor | 0.181 |
Rwork | 0.177 |
R-free | 0.25690 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qmf |
RMSD bond length | 0.014 |
RMSD bond angle | 1.807 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 140.497 | 46.676 | 2.640 |
High resolution limit [Å] | 2.503 | 7.910 | 2.503 |
Rmerge | 0.031 | 0.695 | |
Rpim | 0.013 | 0.266 | |
Total number of observations | 4422 | 19864 | |
Number of reflections | 18411 | ||
<I/σ(I)> | 14.3 | 47 | 3.3 |
Completeness [%] | 97.3 | 98.9 | 95.7 |
Redundancy | 7.6 | 6.5 | 7.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | 0.2M MgCl2, 0.1M HEPES pH8,18% (W/V) PEG 3350, Soaked with 0.1M HEPES pH8, 18% (W/V) PEG 3350, 10% Glycerol for 24 hours, VAPOR DIFFUSION, HANGING DROP, temperature 298K |