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4PTK

Crystal structure of Staphylococcal IMPase-I complex with 3Mg2+ and Phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 21 2 21
Unit cell lengths60.428, 62.455, 140.497
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.720 - 2.503
R-factor0.181
Rwork0.177
R-free0.25690
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3qmf
RMSD bond length0.014
RMSD bond angle1.807
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.20)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]140.49746.6762.640
High resolution limit [Å]2.5037.9102.503
Rmerge0.0310.695
Rpim0.0130.266
Total number of observations442219864
Number of reflections18411
<I/σ(I)>14.3473.3
Completeness [%]97.398.995.7
Redundancy7.66.57.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82980.2M MgCl2, 0.1M HEPES pH8,18% (W/V) PEG 3350, Soaked with 0.1M HEPES pH8, 18% (W/V) PEG 3350, 10% Glycerol for 24 hours, VAPOR DIFFUSION, HANGING DROP, temperature 298K

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PDB entries from 2024-11-06

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