4PMX
Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri in the native form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-05 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.03 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.463, 71.834, 83.839 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.950 - 1.304 |
R-factor | 0.1333 |
Rwork | 0.132 |
R-free | 0.17430 |
Structure solution method | SAD |
RMSD bond length | 0.023 |
RMSD bond angle | 2.020 |
Data reduction software | HKL-2000 |
Refinement software | REFMAC (5.7.0032) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.320 |
High resolution limit [Å] | 1.300 | 3.530 | 1.300 |
Rmerge | 0.040 | 0.016 | 0.561 |
Total number of observations | 200829 | ||
Number of reflections | 69082 | ||
<I/σ(I)> | 13.5 | ||
Completeness [%] | 94.4 | 99 | 95.5 |
Redundancy | 2.9 | 3.4 | 3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | Polyethylene glycol 8,000 |